Its easier if you have two models to start with but it isn't completely necessary. Start by finding the spot where you want to insert the "plug". Cut the model as cleanly and squarely as possible. You can cut a corresponding section from the second kit to use as a filler section to for the extension or use some bass wood. I've used wood and even resin to create a plug to lengthen a fuselage.
What ever method you use, be sure to plan it out carefully! Incorporate reinforcements to make the structure strong. Avoid using tons of fillers as they can shrink, crack and warp if sufficient structure isn't supporting it.
Whether you are lengthening or shortening, you have to plan and make your cuts square to ensure perfect alignment.
Measure twice, cut once! Use the proper tools!!! I'm using a micro razor saw to make this cut...note I have the fuselage half supported off the bench to allow travel space for the saw. To keep it from moving while I cut, its also taped to the bench. Once I reach the tape, I move the tape to an area where I have already cut. I'm increasing the height of this DC-6 fuselage to make it a "Guppy" type aircraft. The fuselage is going to be lengthened as well as made taller in cross section. The more precise the measurements and cutting, the easier it will be to piece it all together.