Well, I have had that similar problem, where you get overspray on the clear. Hopefully, you painted with enamels such as Model Master or Humbrol. If you used acrylic, stop here. I have no answer. If you used enamel, your saving grace here is it is over Future, the wonder worker. Just think back and make sure you put a good coat of Future over all parts of the canopy before you try this.This will sound drastic, use a Q tip dipped in enamel thinner, then wring out most of it so the Q tip is damp. Then try removing the opverspray from a small section of the canopy. You may have to use several clean Q tipsto get it off. The thinner should not harm the future. You may have to resort to lacquer thinner on the Q tip if enamel does not get it off. This has worked for me in small spots, recoat with Future when all the paint is gone, should be OK. I would strongly suggest you similate your problem on a test canopy with the future and a bit of overspray and try this to get a feel for how much thinner, pressure, finess, etc. it will take before you tackle the real canopy.
As for the foil, no easy answer there. Run a new #11 blade alonng the paint edge to help keep the paint from comming up with the foil. Then, maybe a sharpened toothpick to try pulling the foil up. For the residue, try pulling it off with some good brand, say 3M, masking tape. Rub it on the sticky part real good, pull it off. This works pretty well on sticky tape residue.
Good luck. Been there, hate when that happens. I don't use foil for masking myself because of the same nasty problems you have encountered.