Multiple thin coats is always better than one thick coat.
Always start spraying "before" the subject and spray past before stopping the paint flow. For something like a wing, spray along the direction of the airflow (ie. across the wing, from front to back) rather than along it.
The unevenness may also be a result of the pigment settling in your airbrush jar/cup while you're working. I don't use MM acryls, but Tamiya's OD is made up of several pigments, a dense brown pigment which settles quite quickly and a less dense green which is finer and settles more slowly. If you are painting for an extended period of time, it may be worthwhile stopping and re-mixing the paint.
Some unevenness may not be a bad thing, especially if you are going to weather your model.