I use SolvaSet, and the same thing happens, decals from various manufacturers will wrinkle, but as others have noted in their description of Micro-Sol, the wrinkles smooth out as the solution dries and the decal film dries and sets.
When I've had wrinkling make it past the drying stage, I have applied additional amounts of the setting solution--and yes, as some of the others have noted, in small amounts--re-dissolving the decal and then setting it again as it dries. Sometimes it's been necessary to use a needle or a sharp (ie, new) Nr. 11 blade to make cuts or holes in the film, to help the film settle down again, without wrinkles.
And when there were still wrinkles, at that point, I carefully sanded them out, using a piece of a green scouring pad, and touched them up with paint.
The most troublesome decals I've used so far, were the national insignia and squadron codes in EagleCal's "Little Chief" set, for 1/48 P-47Ds. The insignia and squadron codes all had some wrinkling that just would not go away, though the decal settled down absolutely thin and flat otherwise. The squadron codes were prone to flaking, too, which I had to touch up with paint, and some Future. But the rest of the decals in the set were just fine, like the nose art, and the stencils.