For decades I have used isopropyl for cleaning before painting, and even between coats with enamels and lacquers. Never had a problem. If you had problems putting it on that is not blushing (water vapor condensation), because that happens during drying. How far was the can nozzle while spraying ( I use a distance of three to four inches with those cans- Tamiya's stuff does require being a little closer than those big cans of auto primer. Could it be a bad can? Maybe so.
If the can is brand new, you need to shake it at least a minute. That fine primer does seem to take more shake. These days I do not wash (soap and water) for anything except resin models or parts. Very little mold release is used these days on styrene, and a wipe with alcohol always takes what remains off for me. What brand is the kit?