Negative, the 1/48th scale weapons set does not come with the proper adapters for the F-14 (I've got several boxes of each of the 1/48th weapons sets); the Tomcat uses the Phoenix "pallets" when carrying JDAM's (and GBU-28's), but I'm not sure where you can get the adapter to adapt from the Phoenix pallet to the GBU-31. Here is a good picture of an F-14 with the adapter installed:
For more info on the Tomcat and the various weapons it can carry, go here:
http://www.anft.net/f-14/f14-detail-weapons.htm
1/48th Monogram A-37 Dragonfly: 95% (so close!); 1/35th Academy UH-60L: 90%; 1/35th Dragon "Ersatz" M10: 75%; 1/35th DML E-100 Super Heavy Tank: 100%; 1/48 YF-12A, 95%; 1/48 U-2R: 90%; 1/48 B-58 Hustler: 50%; 1/32 F-117, 50%; 1/48 Rafale M: 50%; 1/48 F-105D: 75%; 1/48 SOS A-1H Skyraider: 50%; 1/48th Hobby Boss Su-27: 50%; 1/16th Revell Lamborghini Countach: 75%; 1/12th Otaki Lamborghini Countach: 25%; Tamiya 1/35th M3 Bradley Cavalry Fighting Vehicle: 25%