200mm that is about 1/9 scale if I am correct.
First of all you will need to "pin" the parts together(which I asume you did), CA glue is not advised for such a large figure(or for large gap-filling) rather use 5~10 minute epoxy.
Normally there is no problem with filling the gap with either thinned down putty or 2-part epoxy butty, only think I can imagine is that somehow the CA prevents the putty from blending nicely and thus you get the seam.
My suggestion would be to sand the resin down over the joint and re-build that section using 2-part epoxy putty, but the dried CA might give you grieve as it dries harder than the surrounding resin and thus is tough to remove(especially when hit with a kicker).
A pic as the kit looks right now might give me a better idea on how to assist you.