Considering the Dragon 1/700 CVL kits -
I have an Independence kit with transparent deck and hangar sides and PE hangar deck. And I have a Belleau Wood kit with a grey deck, but still having transparent hangar sides and PE hangar deck. Both have the hull bottom and nice Dragon aircraft., as well as the original Skywave single TBD and F9F. Certainly the original Skywave kits do not have clear decks or the Dragon aircraft sets. The Dragon aircraft in these kits are only TBF and F6F.
I can't speak to the contents of the Dragon USS Princeton or the Revell releases of this kit - don't have them close to hand.
But... As for clear deck presentation, I do have a suggestion. A few years back, somewhere on the internet, I saw a 1/700 model of a modern CVN with a partially clear deck. The builder had masked the painting of the flight deck to leave a rectangular area clear, giving the impression of a cutaway, and he had painted the hangar deck and inside bulkheads very nicely and parked a few aircraft in view. I thought it looked terrific, and I fully intend to build one that way. Someday. Presently, I think it is down below #75 on my list of future projects, but I'm really going to do it!
And keep in mind that some of the WWII carriers carried spare planes disassembled, with the wings on the upper bulkheads in the hangar and the fuselages hanging from the overhead. Doing all that in 1/700 might clutter a rectangular view into the hangar, but the spare wings might look good.
As for painting the clear plastic aircraft, I agree with the method presented above. Paint the whole bird, except for canopy, in Chromate Green. Then paint the blue/ grey over the green. The green will kinda glow through the canopy, quite nicely.
Good luck on your project,
Rick Heinbaugh