Don´t worry about the aft smokestack, it is perfectly correct, it is just hardly visible on photos because the bent area is usually obscured by platforms. All the Takaos were built that way and kept the stacks through all stages of modification.
But, if you want to build Chokai (as I want, too), there is one issue with the kit: Chokai did not get the torpedo bulges. The other three kits get them glued on, but the area underneath is devoid of details - no plating, no scuttles or pipes, even though those are featured on the box photos and even in the instructions! So in case of Chokai you will have to detail this area yourself.
Not particularly hard to do, but I find this omission quite a letdown considering how well researched and engineered the kit is in general. Still, the Takaos are great kits and the complicated hull lines are perfectly rendered (I do not want to imagine what a certain Chinese manufacturer would have done to them), but if you want a kit free of pitfalls, you might want to get Takao, Atago or Maya.