As far as the linked image goes, it looks like it's stored in Google images. When I click the link in the original post, I'm prompted to log in to Google (I'm currently logged out, on this machine and in this session).
As far as fixing ejection pin marks goes, yeah, it's tricky. It's like fixing any other surface mark-you will likely wind up removing surrounding detail. You need to be prepared to touch that up or even replace the detail as necessary.
If the mark is in a relatively open area, with no surrounding detail (like deck planks), you can sand it away gently. I have taken a small strip of sandpaper and wrapped it around the end of a pencil, that is, from one side of the end, across the end, and up the other side, and used that to sand the mark away. I've filled the mark with putty as necessary, too.
I recently tried Perfect Plastic Putty, and it would work very well for this application, since you can apply it and then remove the excess with a wet fingertip.
You can use a chisel, or a knife blade, to scrape the mark away, too. And if it's a deep mark, you can punch a piece of styrene of appropriate thinness, glue it into the mark, and then sand as necessary.
I haven't bothered looking for ready-made tools for this particular task, but you might want to try a search and see, too, if you're not sure about improvising with the tools you may have at hand.
You can always practice removing the marks on the inside of a model, like the inside of a wing surface, hull, fuselage, car body, etc. That way, you can find something that works best.