Iceblend,
Sounds strange, but I use plastic to fill the seams.
I lightly sand the mating syrfaces of the tank and seat - the aim here is for a perfect flat surface (those aligning pins have gotta go.......)
Once that's done, I hold the two halves together, fill the seam with probably a little too much Humbrol Liquid Poly (being careful not to allow runs on the exterior surfaces), let the glue soften the plastic a little, then squeeze the two halves together.
Excess softened plastic will ooze out of the seamline, effectively filling the gap with plastic.
The drying time is a little longer for this "filler" than for most other fillers, but at least the cured filler will be of the same hardness and consistence as the rest of the tank - I've had superglue and other fillers sand back at different rates than the tank or seat they're on, making a slight ridge in the top of the tank that was hard to get rid of.
Cheers'
LeeTree