I have been using Humbrol for about 25 years, and like anything else there is a learning curve.
It is fantastic paint, is about the most opaque paint out there, and must be stirred very very well, as the pigments are finer and hence a higher quality product. Many figure painters use it for this reason, and they are a picky lot.
You can absolutely stir the paint in the can....you must start slowly...and increase speed when it starts to look like paint. I would say a good solid minute or more of stirring a new tin.
If some of the base/paint gets into the lid you just wipe it out with a q-tip or two and wipe the tin down. Q-tips should always be on your paint bench within reach anyway.
Humbrol flat or Matte as they call it is dead flat.