Bish
Its standard practice to use an acrylic clear coat over enamel paints if you are useing enamel or oil washes. In fact its a must.
Wrong. I've used enamels over enamels (including clear coats) without any issues since I first painted a model at age 12, and that was 61 years ago! Did you never paint a second coat of enamel on anything?
The secret is to wait at least 24 hours before applying the second enamel coat, because enamels do not "dry," they cure through cross-polymerization. This is why the advice given by virtually every manufacturer of hobby enamels since the days of Pactra has been to apply a second coat within 8 hours (before the first coat is fully cured) or wait 24 hours (to give the first coat time to cure). For applying a clear coat, however, whether enamel or "acrylic," I would wait at least 24 hours.
I've known award-winning figure painters who applied basic colors with hobby enamels and then applied shadows and shading using artist oils after the enamel had fully cured.
And I know artists who use oil paints over enamels without any issues at all. But they give the underlying enamels adequate time to cure.
As always, I would recommend testing on a scrap piece of plastic or paint hulk, especially if using an "acrylic" or a clear enamel coat from a different manufacturer from that of your base coat. Not all "acrylics" are equal (some are enamels, some are lacquers, and some are water-based), and different manufacturers of enamels have different formulas. And always use the manufacturer's recommended thinner.
As to your issue with the clear coat, I think you may have sprayed it at too high a pressure or at too far a distance from the model, or both.