I'd suspect that it means to mix the green and flat green and then paint the parts with the resulting color. The manufacturers sometimes do that when they want a color slightly lighter or darker than one of their "Standard" colors.
In the case of Tamiya paints their green and flat green are virtually the same shade though, so I'm not sure what they are trying to accomplish unless it's a sort of semi-gloss (not quite gloss, not quite flat) finish.