I'm not sure what you mean by "leaves a visible seam when dried."
Future has very good self leveling properties, but as Matt Swann says, if it pools in spots, it's best to soak it up while still liquid using a paper towel.
Windex will dissolve any acrylic coating on which I have tried it. So will any other solvent that works on acrylic, just as using mineral spirits, paint thinner, etc. will dissolve enamels.
If you are satisfied with a paint job, but are worried that you may have to strip part or all of the overlying coat, give the model a light coating of artist's workable fixative, available at artist's supply stores. This will seal the underlying paint and provide some protection if you have to strip the top coat.