If you aren't aware, a great website is scalemates.com.
Its a member generated data base that's usually pretty accurate and complete.
So if for instance you do a search for F-16E you'll get a lot of kits, aftermarket, decals, books. That in turn will steer you towards which decal printers might be most focused on MNANG, or Bosnian war, or...
If I were to undertake such a project, I would face the fact that making my own decals would be inevitable unless gaps in the chronology were acceptable, or I found someone who had done same before.
But that's not too difficult.
Do you have a list of the aircraft? What if anything is available for subjects pre- F-16?
Since the subjects are fighters; size could be larger than say a wing of KC-135's.
My own choice would be 1/72. A model in 1/48 would be eight times the size of one in the smaller scale and takes more time, money and display space. There are probably more choices available as well.
Good luck, keep posting.