White 0.010" styrene sheet will work. I have also been tinkering with my first lighting project, and I found that the white plastic will prevent see-through into the model, conceal the yellow SMD chip color, and eliminate the "JJ Abrams lens flare effect".
If you color the sheet plastic front or back, you can use a single light source for different colors. I colored the backsides the tail lights of Halcyon's Aliens APC with a cyan felt marker:
https://flic.kr/p/CbmLTb][/url]APC-52 by N.T. Izumi, on Flickr
https://flic.kr/p/BTNUTC][/url]APC-54 by N.T. Izumi, on Flickr
Good luck on your Enterprise - you certainly have WAY more lights to do than I do! I have a JJ-Prise model that I want to light, so I'll be watching your progress to crib ideas!