Yes, Research seems to never end.
RE: "The plans I have for the exterior of the ship have 8 light holes on the back deck and 14 on the front deck."
The 8 on the back deck are the Coal chutes or shuttles. These are larger openings than the Deck "Dead Lights" or port holes. There is also the Ash removal hatch just behind the port Smoke stack which is the same size opening as the coal chutes. (Some additonla info: There was a Crane added over that area to assist with the ash removal.)
I like the Deck dead lights" similar to the Cottage 1/96 kit. Pretty sure your right, the new pilot house added in the summer of 1862 covered up 4 of the deck "dead-lights or port holes" that were to either side of the original Pilot house. Some of the original plans are misleading, seeming to show only 9. My Micro-Mir 1/144 kit is getting 12 Deck "Dead Lights".
I have a correction to my earlier post. That 1/100 paper kit is correct on the engine room floor color. i.e.: "...it still had blue pigment visible but also ... it had the raised, diamond pattern of a non-skid surface."
Too bad there are no photos of the Monitor after the BIG refit in October. That would have helped with modeling the exterior. I understood there was iron shielding added around the top of the turret to protect the crew though.
Those 1/100 paper plans are looking better and better the more I dig.
The paper kit does not represent the "As-Sunk" USS Monitor as it does not show the raised Berth deck. That section of deck was "raised up 3 feet during the re-fit. It made for lower overhead, but added storage space below, thus giving more room to the Berth deck." (I understand from my reading that this was not too popular with the taller crewmen.)
If you feel inclined to add a WIP under SHIPS, PLEASE DO! I think we would all be impressed with the results. Your quest for knowledge on this endeavor is "catching". As you can see, I have become addicted to this quest too.
Jim.
Edit: Regarding The hatch situation with deck access from the Turret. I think you are right. I have seen one drawing that shows one large opening under the turret. In that case both port-side or both Starboard side turret deck gratings could line up for access depending on turret disposition. i.e.: Turret pointed to Port, Starboard grating access. Turret pointed to Starboard, port-side grating access. However, that would effectively stop the Monitor from firing while replenishing Munitions.
Edit: Photos taken on July 9 1862 show the turret pointed to starboard (perhaps more to the Starboard Quarter) This enabled access for the crew.