Since reading Woodburner's excellent survey of the evidence, I have gone back to research for my article. I did find a few things not mentioned before. There was a bit of misdirection in identifying a model in the Ashmolean Museum at Oxford, made shortly after the death of Queen Eliabeth I as the Golden Hind, since disproved. However the model is thought to represent a merchant vessel of circa 1600.
This is probably the same size as the GH, but, as Woodburner remarked, the use of the stern gallery on smaller vessels was not adopted until perhaps 20 years after the GH was built. It had been "positively" id'd as the GH in an article by Naish Prideaux in the Mariner's Mirror, vol. 34, 1948, but since then his conclusions have been refuted. I believe that this model might also have inspired kit marketers to copy it's lines. I have even seen a watercolor of the "Caga-Fuego", the large Spanish treasure galleon looted by Drake off the Mexican coast that replicates the model.
One possible reliable guide---which seems to follow the Boazio illustrations pointed out by Woodburner--is a sepia portrait of the GH done by Gergory Robinson. This painting is reproduced in the 1973 book by T.W.E. Roche, "The Golden Hind", in the illustration section between pp. 40 and 41. Robinson wrote a careful investigative piece, " The evidence about the Golden Hind" in the Mariner's Mirror, vol. 35, 1949, fully discussing the vessels dimensions and armament. It---and Roche's commentary--pretty much corroborates what Woodburner said. I can't scan/reproduce the image here, but anyone interested in modeling the GH might refer to that illustration. The book is readily available through ABE. The illustration shows topgallent sails on the fore and mainmasts, but I believe that Spanish (or English?) sources mention that the GH would mount the topgallant yards at sea when needed for a chase, etc. They could be taken down and stored otherwise.
By the way, Woodburner, I would like to give you credit in my article for your research. If you'd email me (Jimmyjb@concentric.net) with your name, I'd be pleased to note you as a source in the article. Unless you'd rather me not.
Jim