Squadron putty and NPR (acetone) will damage the model.
The trick is to work quickly and with a soft touch. When done, leave the model alone for a day. When you come back the plastic will no longer be soft.
Also, beware of clear plastic, this stuff with craze it like crazy.
milliput is special in that it is water soluable. I find it a bit of a paint.
Try putting a thin bead of squadron, then using a small chisel scrap it off. Should save you from much sanding.