This is a great page on the Zekes used at Pearl Harbor. They were painted in what was described at the time as a "caramel" color. Pics of pieces of these aircraft are included, authenticating this color.
http://j-aircraft.com/research/jimlansdale/pearl/jimlpearl.htm
Some A6M3 Type 22s were overpainted with Mitsubishi green when they were transferred to land bases in the Solomons. This paint was smeared on the aircraft using brushes, rags, and even brooms.
This is a page on Zeke color schemes:
http://j-aircraft.com/research/zeroclr.htm
And there is more info here:
http://j-aircraft.com/research/colormix.htm
Hope this helps.